FreeSurfer MRI reconstruction
Anatomical reconstruction
The first processing stage is the creation of various surface reconstructions. Usually a full FreeSurfer reconstruction is obtained by the following commands:
$ my_subject=sample
$ my_NIfTI=/path/to/NIfTI.nii.gz
$ recon-all -i $my_NIfTI -s $my_subject -all
In $ my_NIfTI=/path/to/NIfTI.nii.gz
, what is the data of “NIfTI.nii.gz” and where can it be downloaded and run offline?