Generate individual cortex using T1 MRI

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1

Hi, I want to use Python to generate individual cortex using T1 MRI like SPM, anyone knows how to do this?

2

Hello @BarryLiu97,

if I’m understanding correctly, you want to reconstruct cortical surfaces based on a T1-weighted MRI scan. You’ll want to use FreeSurfer for this purpose, running the recon-all command. See this tutorial:

https://mne.tools/stable/auto_tutorials/forward/10_background_freesurfer.html

Once the surfaces have been generated, you can use FreeView to interactively visualize the surfaces.

3

Thank you so much for your reply!