run hdr and img format in freesurfer

✉️ Mailing List Archive (read-only)
1

Hello all,

i have got the images in .hdr and .img, when i am trying to run "recon-all -i sub.hdr -s subject -autorecon1". It gives the error does not open the hdr files.

Can some one please help me out with, how should i run recon-all on hdr and img files?

Thanks,
Ritesh Mahajan

2

try to use mri_convert or nibabel in Python to convert the file to .nii or mgz

HTH
Alex