Hi,
when processing the MEG file named sub-CC120049_ses-P2_task-rest_meg.fif with the MNE-BIDS-Pipeline we get the following error:
:x: sub-CC120049 ses-P2 run-rest A critical error occurred.
The error message was: 'raw_task-rest_run-None' Aborting pipeline run.
The traceback is: File "/imaging/local/software/miniconda/envs/camcan/lib/python3.10/site-packages/mne_bids_pipeline/steps/preprocessing/_01_data_quality.py", line 80, in assess_data_quality bids_path_in = in_files.pop(key)
The only way to solve this was to specify the <run> BIDS entity, however there is only one run of this taks so this shouldn’t be necessary to specify according to the BIDS specification as the <run> entity is optional.
Did we miss something or is this perhaps a bug in the pipeline?
Many thanks,
Máté
- MNE version: 1.9.0
- MNE-BIDS-Pipeline version: 1.9
- operating system: Linux-3.10.0-1160.el7.x86_64-x86_64-with-glibc2.17