Retain the size of the largest cluster with sum of t-test value

Hi,

As you can see the screen shot below (point no.4) that I read from here. I would like to know which function and parameter that should adjust in order to retain the size of largest cluster permutation based on the sum of t-test value or by average of t-test value of a cluster ?

Thanks
IG

  • MNE-Python version: 0.23.0
  • operating system: ubuntu 20.0

Using t_power=1 you will get a sum of t values within a cluster. If you want the average t value within the cluster you can just take the cluster β€œscore” and divide it by the number of points. Both of these should match what you get when just using the cluster indices/mask to operate on the t values directly (via sum or mean or whatever).

Thanks @larsoner . Let me see it again.

Best
IG