MNE VS NIRS Toolbox

Hey everyone,

I am trying to replicate my FNIRS analysis that i have done in MNE in NIRS toolbox to ensure that I am getting similar results across the two data processing programs and I am getting radically different results at both the group and individual subject level. I am wondering if anyone has any clue why this may be happening? My inital thought is that the AR-IRLS prewhitening glm in NIRS toolbox is way different than the ar5 noise model for prewhitening in the MNE. Im curious on peoples thoughts on this and if they have any potential solutions as I would much prefer to use MNE but my PI insists that NIRS is the field standard and is therefore better. Any help would be greatly appricitaed ! Thanks in advance!