mne.viz.plot_raw_psd(raw) not work

💬 Support & Discussions
,
1

mne.viz.plot_raw_psd(raw) work diffrent in different mne version
in MNE version: 0.22
mne.viz.plot_raw_psd(raw_data, fmin = 4, fmax= 45)
show the correct image that i want:

image
image1920×736 108 KB

in MNE 1.4.2 it gets problem
mne.viz.plot_raw_psd(raw_data, fmin = 4, fmax= 45)
show the following error: ‘NoneType’ object has no attribute ‘_get_renderer’

image
image1094×96 13 KB

if i change the code a bit:
mne.viz.plot_raw_psd(raw_data, fmin = 4, fmax= 45,average=True);

i get a plot ,but i want color plot for each sensor seperately as the first plot

image
image2088×784 122 KB

the info for raw_data is code as:

info = mne.create_info(eeg_channels.tolist(), ch_types=32*['eeg'], sfreq=128)
info.set_montage('standard_1020')

image
image1232×444 22 KB

2

Hello,

Could you try using the Spectrum API from the raw methods?

raw = ...
spectrum = raw.compute_psd(fmin=4, fnax=45)
spectrum.plot()

That said, I think I saw that error once yesterday and did not dig in. I’ll have a look when able.

Mathieu

3

can you try

mne.viz.plot_raw_psd(raw_data, fmin = 4, fmax= 45,average=False)

?

Alex

6

Thank for your kind reply, it still not work. It seems that it plot only when average=True

raw = raw_data
spectrum = raw.compute_psd(fmin=4, fmax=45)
spectrum.plot(average=True);

image
image2052×850 177 KB

when set average=False
still get the error:
AttributeError: ‘NoneType’ object has no attribute ‘_get_renderer’

7

still not work,get the same error as before
AttributeError: ‘NoneType’ object has no attribute ‘_get_renderer’

8

I can’t reproduce on main or on maint/1.4. Can you run this code snippet and let me know if that works?

from mne.datasets import sample
from mne.io import read_raw_fif


fname = sample.data_path() / "MEG" / "sample" / "sample_audvis_raw.fif"
raw = read_raw_fif(fname, preload=False)
raw.crop(0, 60).pick("eeg")
raw.load_data()
raw.filter(1., 40.)
raw.set_eeg_reference("average")
spectrum = raw.compute_psd(fmin=1, fmax=30)
spectrum.plot(average=False)

If it does work, can you share the raw file you use which fails?
If it doesn’t work, can you update your MNE version/make sure you are using the latest one? e.g. pip install --upgrade mne.

Mathieu

9

Thank you Mathieu for your kind reply. @mscheltienne
The version i am using already updated, no change.

When i run the code you offer, the same error happen again
AttributeError: ‘NoneType’ object has no attribute ‘_get_renderer’

For the error message, all is related to matplotlib and Ipython as below.
I am using %matplotlib inline as the backend.

image
image1920×1268 450 KB

I don’t know if this related to the case that i am running jupylab remotely through port forwarding.

I installed Jupyterlab on a remote server from my university cluster, i connect to the Jupyter lab interface using SSH tunneling.
But if I run in the mne0.22 environment, it can show the plot correctly.

My mne.info() as follows:

image
image1260×676 71.6 KB

I also try this code block in colab, it can run and show the plot.

10

Let’s try to install the additional dependencies and to update ipython, matplotlib and so on.

pip install --upgrade ipython ipykernel ipympl matplotlib

Mathieu

11

The traceback you show is entirely withing the ipython/matplotlib namespaces. This means that the error does not originate within MNE-Python code. That makes it harder for us to debug it.

I think @mscheltienne is correct to suggest that you try upgrading ipython, matplotlib, etc, but it may be that the reason it works with MNE 0.22 is that the MNE 0.22 environment ends up with older versions of ipython/matplotlib/etc and that is why it works (i.e., there might be a bug in newer versions of those packages).

12

I had a look at my environment using main, created when MNE-main was in version 1.4.0.dev106+gbfc8a3c47 (editable install, only pulling main without re-install thus not updating the metadata). Everything is fairly recent, only one or 2 minor version behind at most.

matplotlib        3.7.1 (backend=module://ipympl.backend_nbagg)
ipympl            0.9.3
ipykernel:        6.22
ipython:          8.12

The code snippet I shared works in a jupyter-lab cell:

%matplotlib inline

from mne.datasets import sample
from mne.io import read_raw_fif


fname = sample.data_path() / "MEG" / "sample" / "sample_audvis_raw.fif"
raw = read_raw_fif(fname, preload=False)
raw.crop(0, 60).pick("eeg")
raw.load_data()
raw.filter(1., 40.)
raw.set_eeg_reference("average")
spectrum = raw.compute_psd(fmin=1, fmax=30)
spectrum.plot(average=False)

Note the different backend, maybe installing ipympl will solve your issue.

Mathieu

13

Thank you Mathieu!
It can print the graph now! Thank you!
Just a bit messy thing i still don’t understand, it print the same error message between the same graph.

image
image1072×1688 179 KB

if I add the semicolon at the end of the plot code as:
spectrum.plot(average=False);
It will show two same plot without the error messages:

image
image1920×1486 230 KB

Thank you @drammock @mscheltienne for your advice, finally work

14

Hello!

I get exactly the same error when trying to run raw.compute_psd().
When using %matplotlib qt it works fine, but I get the following error when using %matplotlib inline

---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
File ~/anaconda3/envs/mne-env/lib/python3.10/site-packages/IPython/core/formatters.py:340, in BaseFormatter.__call__(self, obj)
    338     pass
    339 else:
--> 340     return printer(obj)
    341 # Finally look for special method names
    342 method = get_real_method(obj, self.print_method)

File ~/anaconda3/envs/mne-env/lib/python3.10/site-packages/IPython/core/pylabtools.py:152, in print_figure(fig, fmt, bbox_inches, base64, **kwargs)
    149     from matplotlib.backend_bases import FigureCanvasBase
    150     FigureCanvasBase(fig)
--> 152 fig.canvas.print_figure(bytes_io, **kw)
    153 data = bytes_io.getvalue()
    154 if fmt == 'svg':

File ~/anaconda3/envs/mne-env/lib/python3.10/site-packages/matplotlib/backend_bases.py:2353, in FigureCanvasBase.print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, bbox_inches, pad_inches, bbox_extra_artists, backend, **kwargs)
   2350         bbox_inches = bbox_inches.padded(pad_inches)
   2352     # call adjust_bbox to save only the given area
-> 2353     restore_bbox = _tight_bbox.adjust_bbox(
   2354         self.figure, bbox_inches, self.figure.canvas.fixed_dpi)
   2356     _bbox_inches_restore = (bbox_inches, restore_bbox)
   2357 else:

File ~/anaconda3/envs/mne-env/lib/python3.10/site-packages/matplotlib/_tight_bbox.py:28, in adjust_bbox(fig, bbox_inches, fixed_dpi)
     26 locator = ax.get_axes_locator()
     27 if locator is not None:
---> 28     ax.apply_aspect(locator(ax, None))
     29 locator_list.append(locator)
     30 current_pos = ax.get_position(original=False).frozen()

File ~/anaconda3/envs/mne-env/lib/python3.10/site-packages/mpl_toolkits/axes_grid1/inset_locator.py:73, in AnchoredLocatorBase.__call__(self, ax, renderer)
     71 def __call__(self, ax, renderer):
     72     self.axes = ax
---> 73     bbox = self.get_window_extent(renderer)
     74     px, py = self.get_offset(bbox.width, bbox.height, 0, 0, renderer)
     75     bbox_canvas = Bbox.from_bounds(px, py, bbox.width, bbox.height)

File ~/anaconda3/envs/mne-env/lib/python3.10/site-packages/matplotlib/offsetbox.py:399, in OffsetBox.get_window_extent(self, renderer)
    396 def get_window_extent(self, renderer=None):
    397     # docstring inherited
    398     if renderer is None:
--> 399         renderer = self.figure._get_renderer()
    400     bbox = self.get_bbox(renderer)
    401     try:  # Some subclasses redefine get_offset to take no args.

AttributeError: 'NoneType' object has no attribute '_get_renderer'

I’m using the following version of MNE:

Platform             macOS-13.4.1-arm64-arm-64bit
Python               3.10.12 | packaged by conda-forge | (main, Jun 23 2023, 22:41:52) [Clang 15.0.7 ]
Executable           /Users/dani/anaconda3/envs/mne-env/bin/python
CPU                  arm (12 cores)
Memory               32.0 GB

Core
├☑ mne               1.4.2
├☑ numpy             1.24.4 (OpenBLAS 0.3.23 with 12 threads)
├☑ scipy             1.11.1
├☑ matplotlib        3.7.2 (backend=module://matplotlib_inline.backend_inline)
├☑ pooch             1.7.0
└☑ jinja2            3.1.2

Numerical (optional)
├☑ sklearn           1.3.0
├☑ numba             0.57.1
├☑ nibabel           5.1.0
├☑ nilearn           0.10.1
├☑ dipy              1.7.0
├☑ openmeeg          2.5.6
├☑ pandas            2.0.3
└☐ unavailable       cupy

Visualization (optional)
├☑ pyvista           0.40.1 (OpenGL 4.1 Metal - 83.1 via Apple M2 Max)
├☑ pyvistaqt         0.0.0
├☑ ipyvtklink        0.2.2
├☑ vtk               9.2.6
├☑ qtpy              2.3.1 (PyQt5=5.15.6)
├☑ ipympl            0.8.7
├☑ pyqtgraph         0.13.3
└☑ mne-qt-browser    0.5.1

Ecosystem (optional)
└☐ unavailable       mne-bids, mne-nirs, mne-features, mne-connectivity, mne-icalabel, mne-bids-pipeline

And these are the packages in my conda environment:

(mne-env) dani@Danielas-MBP-2 ~ % conda list                                             
# packages in environment at /Users/dani/anaconda3/envs/mne-env:
#
# Name                    Version                   Build  Channel
aiohttp                   3.8.4           py310h2aa6e3c_1    conda-forge
aiosignal                 1.3.1              pyhd8ed1ab_0    conda-forge
anyio                     3.7.1              pyhd8ed1ab_0    conda-forge
aom                       3.5.0                h7ea286d_0    conda-forge
appnope                   0.1.3              pyhd8ed1ab_0    conda-forge
argon2-cffi               21.3.0             pyhd8ed1ab_0    conda-forge
argon2-cffi-bindings      21.2.0          py310h8e9501a_3    conda-forge
arrow                     1.2.3                    pypi_0    pypi
asttokens                 2.2.1              pyhd8ed1ab_0    conda-forge
async-timeout             4.0.2              pyhd8ed1ab_0    conda-forge
attrs                     23.1.0             pyh71513ae_1    conda-forge
aws-c-auth                0.7.0                hf4e22b4_2    conda-forge
aws-c-cal                 0.6.0                h43a37b4_0    conda-forge
aws-c-common              0.8.23               hb547adb_0    conda-forge
aws-c-compression         0.2.17               h31a6291_1    conda-forge
aws-c-event-stream        0.3.1                h1e1aaf7_1    conda-forge
aws-c-http                0.7.11               h3107daf_0    conda-forge
aws-c-io                  0.13.28              hf096fb3_0    conda-forge
aws-c-mqtt                0.8.14               h9418dbe_2    conda-forge
aws-c-s3                  0.3.13               h79b0d72_2    conda-forge
aws-c-sdkutils            0.1.11               h31a6291_1    conda-forge
aws-checksums             0.1.16               h31a6291_1    conda-forge
aws-crt-cpp               0.20.3               h0918d87_4    conda-forge
aws-sdk-cpp               1.10.57             h6f3a27c_17    conda-forge
backcall                  0.2.0              pyh9f0ad1d_0    conda-forge
backports                 1.0                pyhd8ed1ab_3    conda-forge
backports.functools_lru_cache 1.6.5              pyhd8ed1ab_0    conda-forge
beautifulsoup4            4.12.2             pyha770c72_0    conda-forge
bleach                    6.0.0              pyhd8ed1ab_0    conda-forge
blosc                     1.21.4               hc338f07_0    conda-forge
brotli                    1.0.9                h1a8c8d9_9    conda-forge
brotli-bin                1.0.9                h1a8c8d9_9    conda-forge
brotli-python             1.0.9           py310h0f1eb42_9    conda-forge
brunsli                   0.1                  h9f76cd9_0    conda-forge
bzip2                     1.0.8                h3422bc3_4    conda-forge
c-ares                    1.19.1               hb547adb_0    conda-forge
c-blosc2                  2.10.0               h068da5f_0    conda-forge
ca-certificates           2023.05.30           hca03da5_0  
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cairo                     1.16.0            h1e71087_1016    conda-forge
certifi                   2023.5.7        py310hca03da5_0  
cffi                      1.15.1          py310h2399d43_3    conda-forge
cfitsio                   4.2.0                h2f961c4_0    conda-forge
charls                    2.4.2                h13dd4ca_0    conda-forge
charset-normalizer        3.2.0              pyhd8ed1ab_0    conda-forge
colorama                  0.4.6              pyhd8ed1ab_0    conda-forge
colorspacious             1.1.2              pyh24bf2e0_0    conda-forge
comm                      0.1.3              pyhd8ed1ab_0    conda-forge
contourpy                 1.1.0           py310h38f39d4_0    conda-forge
cycler                    0.11.0             pyhd8ed1ab_0    conda-forge
darkdetect                0.8.0              pyhd8ed1ab_0    conda-forge
dav1d                     1.2.1                hb547adb_0    conda-forge
debugpy                   1.6.7           py310h0f1eb42_0    conda-forge
decorator                 5.1.1              pyhd8ed1ab_0    conda-forge
defusedxml                0.7.1              pyhd8ed1ab_0    conda-forge
deprecated                1.2.14             pyh1a96a4e_0    conda-forge
dipy                      1.7.0           py310ha11ecec_0    conda-forge
double-conversion         3.3.0                h13dd4ca_0    conda-forge
edflib-python             1.0.7              pyhd8ed1ab_0    conda-forge
eeglabio                  0.0.2.post4        pyhd8ed1ab_0    conda-forge
eigen                     3.4.0                hc021e02_0    conda-forge
entrypoints               0.4                pyhd8ed1ab_0    conda-forge
exceptiongroup            1.1.2              pyhd8ed1ab_0    conda-forge
executing                 1.2.0              pyhd8ed1ab_0    conda-forge
expat                     2.5.0                hb7217d7_1    conda-forge
ffmpeg                    5.1.2           gpl_he347a24_111    conda-forge
flit-core                 3.9.0              pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 hab24e00_0    conda-forge
fontconfig                2.14.2               h82840c6_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.41.0          py310h2aa6e3c_0    conda-forge
fqdn                      1.5.1                    pypi_0    pypi
freetype                  2.12.1               hd633e50_1    conda-forge
fribidi                   1.0.10               h27ca646_0    conda-forge
frozenlist                1.4.0           py310h2aa6e3c_0    conda-forge
future                    0.18.3             pyhd8ed1ab_0    conda-forge
gettext                   0.21.1               h0186832_0    conda-forge
giflib                    5.2.1                h1a8c8d9_3    conda-forge
gl2ps                     1.4.2                h17b34a0_0    conda-forge
glew                      2.1.0                h9f76cd9_2    conda-forge
glib                      2.76.4               ha614eb4_0    conda-forge
glib-tools                2.76.4               ha614eb4_0    conda-forge
gmp                       6.2.1                h9f76cd9_0    conda-forge
gnutls                    3.7.8                h9f1a10d_0    conda-forge
graphite2                 1.3.13            h9f76cd9_1001    conda-forge
gst-plugins-base          1.22.4               h27255cc_1    conda-forge
gstreamer                 1.22.4               h8c52bba_1    conda-forge
h5io                      0.1.8              pyha21a80b_0    conda-forge
h5py                      3.9.0           nompi_py310h7fd3376_101    conda-forge
harfbuzz                  7.3.0                h46e5fef_0    conda-forge
hdf4                      4.2.15               h8111dcc_6    conda-forge
hdf5                      1.14.1          nompi_h3aba7b3_100    conda-forge
icu                       72.1                 he12128b_0    conda-forge
idna                      3.4                pyhd8ed1ab_0    conda-forge
imagecodecs               2023.1.23       py310hcb660b6_2    conda-forge
imageio                   2.31.1             pyh24c5eb1_0    conda-forge
imageio-ffmpeg            0.4.8              pyhd8ed1ab_0    conda-forge
importlib-metadata        6.8.0              pyha770c72_0    conda-forge
importlib_metadata        6.8.0                hd8ed1ab_0    conda-forge
importlib_resources       6.0.0              pyhd8ed1ab_1    conda-forge
ipycanvas                 0.13.1             pyhd8ed1ab_0    conda-forge
ipyevents                 2.0.1              pyhd8ed1ab_0    conda-forge
ipykernel                 6.24.0             pyh5fb750a_0    conda-forge
ipympl                    0.9.3                    pypi_0    pypi
ipython                   8.14.0                   pypi_0    pypi
ipython_genutils          0.2.0                      py_1    conda-forge
ipyvtklink                0.2.2              pyhd8ed1ab_0    conda-forge
ipywidgets                7.6.5              pyhd3eb1b0_1  
isoduration               20.11.0                  pypi_0    pypi
jedi                      0.18.2             pyhd8ed1ab_0    conda-forge
jinja2                    3.1.2              pyhd8ed1ab_1    conda-forge
joblib                    1.3.0              pyhd8ed1ab_1    conda-forge
jsoncpp                   1.9.5                hc021e02_1    conda-forge
jsonpointer               2.4                      pypi_0    pypi
jsonschema                4.18.3             pyhd8ed1ab_0    conda-forge
jsonschema-specifications 2023.6.1           pyhd8ed1ab_0    conda-forge
jupyter                   1.0.0           py310hbe9552e_8    conda-forge
jupyter_client            8.3.0              pyhd8ed1ab_0    conda-forge
jupyter_console           6.6.3              pyhd8ed1ab_0    conda-forge
jupyter_core              5.3.1           py310hbe9552e_0    conda-forge
jupyter_events            0.6.3              pyhd8ed1ab_0    conda-forge
jupyter_server            2.7.0              pyhd8ed1ab_0    conda-forge
jupyter_server_terminals  0.4.4              pyhd8ed1ab_1    conda-forge
jupyterlab_pygments       0.2.2              pyhd8ed1ab_0    conda-forge
jupyterlab_widgets        3.0.8              pyhd8ed1ab_0    conda-forge
jxrlib                    1.1                  h27ca646_2    conda-forge
kiwisolver                1.4.4           py310h2887b22_1    conda-forge
krb5                      1.20.1               h69eda48_0    conda-forge
lame                      3.100             h1a8c8d9_1003    conda-forge
lazy_loader               0.2                pyhd8ed1ab_0    conda-forge
lcms2                     2.15                 hd835a16_1    conda-forge
lerc                      4.0.0                h9a09cb3_0    conda-forge
libaec                    1.0.6                hb7217d7_1    conda-forge
libass                    0.17.1               h4da34ad_0    conda-forge
libavif                   0.11.1               h9f83d30_2    conda-forge
libblas                   3.9.0           17_osxarm64_openblas    conda-forge
libbrotlicommon           1.0.9                h1a8c8d9_9    conda-forge
libbrotlidec              1.0.9                h1a8c8d9_9    conda-forge
libbrotlienc              1.0.9                h1a8c8d9_9    conda-forge
libcblas                  3.9.0           17_osxarm64_openblas    conda-forge
libclang                  15.0.7          default_h5dc8d65_2    conda-forge
libclang13                15.0.7          default_hc7183e1_2    conda-forge
libcurl                   8.1.2                h912dcd9_0    conda-forge
libcxx                    16.0.6               h4653b0c_0    conda-forge
libdeflate                1.18                 h1a8c8d9_0    conda-forge
libedit                   3.1.20191231         hc8eb9b7_2    conda-forge
libev                     4.33                 h642e427_1    conda-forge
libexpat                  2.5.0                hb7217d7_1    conda-forge
libffi                    3.4.2                h3422bc3_5    conda-forge
libgfortran               5.0.0           12_2_0_hd922786_31    conda-forge
libgfortran5              12.2.0              h0eea778_31    conda-forge
libglib                   2.76.4               h24e9cb9_0    conda-forge
libiconv                  1.17                 he4db4b2_0    conda-forge
libidn2                   2.3.4                h1a8c8d9_0    conda-forge
libjpeg-turbo             2.1.5.1              h1a8c8d9_0    conda-forge
liblapack                 3.9.0           17_osxarm64_openblas    conda-forge
libllvm14                 14.0.6               hd1a9a77_3    conda-forge
libllvm15                 15.0.7               h504e6bf_2    conda-forge
libmatio                  1.5.23               hc41f82a_3    conda-forge
libnetcdf                 4.9.2           nompi_h9fa6108_109    conda-forge
libnghttp2                1.52.0               hae82a92_0    conda-forge
libogg                    1.3.4                h27ca646_1    conda-forge
libopenblas               0.3.23          openmp_hc731615_0    conda-forge
libopus                   1.3.1                h27ca646_1    conda-forge
libpng                    1.6.39               h76d750c_0    conda-forge
libpq                     15.3                 h7126958_1    conda-forge
libsodium                 1.0.18               h27ca646_1    conda-forge
libsqlite                 3.42.0               hb31c410_0    conda-forge
libssh2                   1.11.0               h7a5bd25_0    conda-forge
libtasn1                  4.19.0               h1a8c8d9_0    conda-forge
libtheora                 1.1.1             h3422bc3_1005    conda-forge
libtiff                   4.5.1                h23a1a89_0    conda-forge
libunistring              0.9.10               h3422bc3_0    conda-forge
libvorbis                 1.3.7                h9f76cd9_0    conda-forge
libvpx                    1.13.0               h7ea286d_0    conda-forge
libwebp-base              1.3.1                hb547adb_0    conda-forge
libxcb                    1.15                 hf346824_0    conda-forge
libxml2                   2.11.4               he3bdae6_0    conda-forge
libxslt                   1.1.37               h1728932_1    conda-forge
libzip                    1.9.2                h76ab92c_1    conda-forge
libzlib                   1.2.13               h53f4e23_5    conda-forge
libzopfli                 1.0.3                h9f76cd9_0    conda-forge
llvm-openmp               16.0.6               h1c12783_0    conda-forge
llvmlite                  0.40.1          py310h95b248a_0    conda-forge
loguru                    0.7.0           py310hbe9552e_0    conda-forge
lxml                      4.9.3           py310h78afa71_0    conda-forge
lz4-c                     1.9.4                hb7217d7_0    conda-forge
markupsafe                2.1.3           py310h2aa6e3c_0    conda-forge
matplotlib                3.7.2           py310hb6292c7_0    conda-forge
matplotlib-base           3.7.2           py310h49faba3_0    conda-forge
matplotlib-inline         0.1.6              pyhd8ed1ab_0    conda-forge
mffpy                     0.8.0              pyhd8ed1ab_0    conda-forge
mistune                   3.0.0              pyhd8ed1ab_0    conda-forge
mne                       1.4.2                hce30654_0    conda-forge
mne-base                  1.4.2              pyh57928b3_0    conda-forge
mne-qt-browser            0.5.1              pyha770c72_0    conda-forge
multidict                 6.0.4           py310h8e9501a_0    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
mysql-common              8.0.33               h7b5afe1_2    conda-forge
mysql-libs                8.0.33               hb292caa_2    conda-forge
nbclassic                 1.0.0              pyhb4ecaf3_1    conda-forge
nbclient                  0.8.0              pyhd8ed1ab_0    conda-forge
nbconvert                 7.7.1              pyhd8ed1ab_0    conda-forge
nbconvert-core            7.7.1              pyhd8ed1ab_0    conda-forge
nbconvert-pandoc          7.7.1              pyhd8ed1ab_0    conda-forge
nbformat                  5.9.1              pyhd8ed1ab_0    conda-forge
ncurses                   6.4                  h7ea286d_0    conda-forge
nest-asyncio              1.5.6              pyhd8ed1ab_0    conda-forge
nettle                    3.8.1                h63371fa_1    conda-forge
networkx                  3.1                pyhd8ed1ab_0    conda-forge
nibabel                   5.1.0           py310hbe9552e_2    conda-forge
nilearn                   0.10.1             pyhd8ed1ab_0    conda-forge
nlohmann_json             3.11.2               h2e04ded_0    conda-forge
notebook                  6.5.4              pyha770c72_0    conda-forge
notebook-shim             0.2.3              pyhd8ed1ab_0    conda-forge
nspr                      4.35                 hb7217d7_0    conda-forge
nss                       3.89                 h789eff7_0    conda-forge
numba                     0.57.1          py310hb9b3264_0    conda-forge
numexpr                   2.8.4           py310h2b830bf_0    conda-forge
numpy                     1.24.4          py310haa1e00c_0    conda-forge
openh264                  2.3.1                hb7217d7_2    conda-forge
openjpeg                  2.5.0                hbc2ba62_2    conda-forge
openmeeg                  2.5.6           py310h2d2325a_1    conda-forge
openssl                   3.1.1                h53f4e23_1    conda-forge
overrides                 7.3.1              pyhd8ed1ab_0    conda-forge
p11-kit                   0.24.1               h29577a5_0    conda-forge
packaging                 23.1               pyhd8ed1ab_0    conda-forge
pandas                    2.0.3           py310h1cdf563_1    conda-forge
pandoc                    3.1.3                hce30654_0    conda-forge
pandocfilters             1.5.0              pyhd8ed1ab_0    conda-forge
parso                     0.8.3              pyhd8ed1ab_0    conda-forge
patsy                     0.5.3              pyhd8ed1ab_0    conda-forge
pcre2                     10.40                hb34f9b4_0    conda-forge
pexpect                   4.8.0              pyh1a96a4e_2    conda-forge
pickleshare               0.7.5                   py_1003    conda-forge
pillow                    10.0.0          py310h60ecbdf_0    conda-forge
pip                       23.2               pyhd8ed1ab_0    conda-forge
pixman                    0.40.0               h27ca646_0    conda-forge
pkgutil-resolve-name      1.3.10             pyhd8ed1ab_0    conda-forge
platformdirs              3.9.1              pyhd8ed1ab_0    conda-forge
ply                       3.11                       py_1    conda-forge
pooch                     1.7.0              pyha770c72_3    conda-forge
proj                      9.2.1                h8fdea58_0    conda-forge
prometheus_client         0.17.1             pyhd8ed1ab_0    conda-forge
prompt-toolkit            3.0.39             pyha770c72_0    conda-forge
prompt_toolkit            3.0.39               hd8ed1ab_0    conda-forge
psutil                    5.9.5           py310h8e9501a_0    conda-forge
pthread-stubs             0.4               h27ca646_1001    conda-forge
ptyprocess                0.7.0              pyhd3deb0d_0    conda-forge
pugixml                   1.13                 h13dd4ca_1    conda-forge
pure_eval                 0.2.2              pyhd8ed1ab_0    conda-forge
py-cpuinfo                9.0.0              pyhd8ed1ab_0    conda-forge
pycparser                 2.21               pyhd8ed1ab_0    conda-forge
pygments                  2.15.1             pyhd8ed1ab_0    conda-forge
pymatreader               0.0.32             pyhd8ed1ab_0    conda-forge
pyobjc-core               9.2             py310hd07e440_0    conda-forge
pyobjc-framework-cocoa    9.2             py310hd07e440_0    conda-forge
pyopengl                  3.1.6              pyhd8ed1ab_1    conda-forge
pyparsing                 3.0.9              pyhd8ed1ab_0    conda-forge
pyqt                      5.15.7          py310h7aaa74b_3    conda-forge
pyqt5-sip                 12.11.0         py310h0f1eb42_3    conda-forge
pyqtgraph                 0.13.3             pyhd8ed1ab_0    conda-forge
pysocks                   1.7.1              pyha2e5f31_6    conda-forge
pytables                  3.8.0           py310hc9e091c_2    conda-forge
python                    3.10.12         h01493a6_0_cpython    conda-forge
python-dateutil           2.8.2              pyhd8ed1ab_0    conda-forge
python-fastjsonschema     2.17.1             pyhd8ed1ab_0    conda-forge
python-json-logger        2.0.7              pyhd8ed1ab_0    conda-forge
python-picard             0.7                pyh8a188c0_0    conda-forge
python-tzdata             2023.3             pyhd8ed1ab_0    conda-forge
python_abi                3.10                    3_cp310    conda-forge
pytz                      2023.3             pyhd8ed1ab_0    conda-forge
pyvista                   0.40.1             pyhd8ed1ab_0    conda-forge
pyvistaqt                 0.11.0             pyhd8ed1ab_0    conda-forge
pywavelets                1.4.1           py310hf1a086a_0    conda-forge
pyyaml                    6.0             py310h8e9501a_5    conda-forge
pyzmq                     25.1.0          py310h30b7201_0    conda-forge
qdarkstyle                3.1                pyhd8ed1ab_0    conda-forge
qt-main                   5.15.8              hcac2fde_14    conda-forge
qtpy                      2.3.1              pyhd8ed1ab_0    conda-forge
readline                  8.2                  h92ec313_1    conda-forge
referencing               0.29.1             pyhd8ed1ab_0    conda-forge
requests                  2.31.0             pyhd8ed1ab_0    conda-forge
rfc3339-validator         0.1.4              pyhd8ed1ab_0    conda-forge
rfc3986-validator         0.1.1              pyh9f0ad1d_0    conda-forge
rpds-py                   0.8.11          py310had9acf8_0    conda-forge
scikit-image              0.21.0          py310h1253130_0    conda-forge
scikit-learn              1.3.0           py310h02d4e2a_0    conda-forge
scipy                     1.11.1          py310h0975f3d_0    conda-forge
scooby                    0.7.2              pyhd8ed1ab_0    conda-forge
seaborn                   0.12.2               hd8ed1ab_0    conda-forge
seaborn-base              0.12.2             pyhd8ed1ab_0    conda-forge
send2trash                1.8.2              pyhd1c38e8_0    conda-forge
setuptools                68.0.0             pyhd8ed1ab_0    conda-forge
sip                       6.7.9           py310h1253130_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
snappy                    1.1.10               h17c5cce_0    conda-forge
sniffio                   1.3.0              pyhd8ed1ab_0    conda-forge
soupsieve                 2.3.2.post1        pyhd8ed1ab_0    conda-forge
sqlite                    3.42.0               h203b68d_0    conda-forge
stack_data                0.6.2              pyhd8ed1ab_0    conda-forge
statsmodels               0.14.0          py310ha11ecec_1    conda-forge
svt-av1                   1.4.1                h7ea286d_0    conda-forge
tbb                       2021.9.0             hffc8910_0    conda-forge
tbb-devel                 2021.9.0             h4f9cb39_0    conda-forge
terminado                 0.17.1             pyhd1c38e8_0    conda-forge
threadpoolctl             3.2.0              pyha21a80b_0    conda-forge
tifffile                  2023.7.10          pyhd8ed1ab_0    conda-forge
tinycss2                  1.2.1              pyhd8ed1ab_0    conda-forge
tk                        8.6.12               he1e0b03_0    conda-forge
toml                      0.10.2             pyhd8ed1ab_0    conda-forge
tomli                     2.0.1              pyhd8ed1ab_0    conda-forge
tornado                   6.3.2           py310h2aa6e3c_0    conda-forge
tqdm                      4.65.0             pyhd8ed1ab_1    conda-forge
traitlets                 5.9.0              pyhd8ed1ab_0    conda-forge
typing-extensions         4.7.1                hd8ed1ab_0    conda-forge
typing_extensions         4.7.1              pyha770c72_0    conda-forge
typing_utils              0.1.0              pyhd8ed1ab_0    conda-forge
tzdata                    2023c                h71feb2d_0    conda-forge
unicodedata2              15.0.0          py310h8e9501a_0    conda-forge
uri-template              1.3.0                    pypi_0    pypi
urllib3                   2.0.3              pyhd8ed1ab_1    conda-forge
utfcpp                    3.2.3                hce30654_0    conda-forge
vtk                       9.2.6           qt_py310h1234567_208    conda-forge
vtk-base                  9.2.6           qt_py310h1234567_208    conda-forge
vtk-io-ffmpeg             9.2.6           qt_py310h1234567_208    conda-forge
wcwidth                   0.2.6              pyhd8ed1ab_0    conda-forge
webcolors                 1.13                     pypi_0    pypi
webencodings              0.5.1                      py_1    conda-forge
websocket-client          1.6.1              pyhd8ed1ab_0    conda-forge
wheel                     0.40.0             pyhd8ed1ab_1    conda-forge
widgetsnbextension        3.5.2           py310hca03da5_0  
wrapt                     1.15.0          py310h8e9501a_0    conda-forge
wslink                    1.11.1             pyhd8ed1ab_0    conda-forge
x264                      1!164.3095           h57fd34a_2    conda-forge
x265                      3.5                  hbc6ce65_3    conda-forge
xlrd                      2.0.1              pyhd8ed1ab_3    conda-forge
xmltodict                 0.13.0             pyhd8ed1ab_0    conda-forge
xorg-libxau               1.0.11               hb547adb_0    conda-forge
xorg-libxdmcp             1.1.3                h27ca646_0    conda-forge
xz                        5.2.6                h57fd34a_0    conda-forge
yaml                      0.2.5                h3422bc3_2    conda-forge
yarl                      1.9.2           py310h2aa6e3c_0    conda-forge
zeromq                    4.3.4                hbdafb3b_1    conda-forge
zfp                       1.0.0                hb6e4faa_3    conda-forge
zipp                      3.16.2             pyhd8ed1ab_0    conda-forge
zlib                      1.2.13               h53f4e23_5    conda-forge
zlib-ng                   2.0.7                h1a8c8d9_0    conda-forge
zstd                      1.5.2                h4f39d0f_7    conda-forge

Is it currently possible to plot power spectra with the current version of MNE or would I have to install an earlier version? I tried to update some dependencies as suggested above using pip install --upgrade ipython ipykernel ipympl matplotlib, but still get the same error.

Thanks so much for your help,
Dani

15

@DaniG downgrade matplotlib from 3.7.2 to 3.7.1. This is not an MNE-Python bug. see Jupyter yields: 'NoneType' object has no attribute '_get_renderer' · Issue #11799 · mne-tools/mne-python · GitHub

2 Likes
16

Amazing - that worked! Thanks a lot :slight_smile: