mne report error

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1

Dear list

When running the following commands from the mne report tutorial
website, I get the following error.

from mne.report import Report
from mne.datasets import sample

Generate the report:

path = sample.data_path()
report = Report()

IOError: [Errno 2] No such file or directory: '/home/lau/anaconda/lib/python2.7/site-packages/mne/html/jquery-1.10.2.min.js'
      
How do I install those missing files?
I'm running python through anaconda (2.1.0) and I have the stable
version of mne (0.8.5).

It's the same issue on my mac 10.9.5 and my linux mint 17 operating systems.

Best

Lau

2

Hi Lau,

Before I investigate further, can I know how did you install mne-python on
your machine?

Mainak

3

Hi Mainak

Of course: I installed anaconda by running the shell script from their
website. (I think it was version 2.0 at the time, but in the meantime
I've updated to 2.1.0.) Then I installed pip through anaconda (conda
install pip (1.5.6) and then through pip I installed mne (pip install
mne (0.8.5))

The installations have been done the same way for my linux and mac
operating systems

Best

Lau

4

hi Lau,

it should be fixed. Version 0.8.6 is on pypi.

https://pypi.python.org/pypi/mne

let us know if it works.

thanks for the bug report.

Alex

5

Hi Alex

I'm not sure it works as supposed to. I do have the files now as the
output below shows:

from mne.report import Report
from mne.datasets import sample

path = sample.data_path()
report = Report()
Embedding : jquery-1.10.2.min.js
Embedding : jquery-ui.min.js
Embedding : bootstrap.min.js
Embedding : jquery-ui.min.css
Embedding : bootstrap.min.css

I can also save the report just fine:
report.save('report.html')

The problem though is that the html is empty. I've attached a
screenshot. I hope I haven't overlooked something obvious.

Best

Lau

hi Lau,

it should be fixed. Version 0.8.6 is on pypi.

mne · PyPI

let us know if it works.

thanks for the bug report.

Alex

Hi Mainak

Of course: I installed anaconda by running the shell script from their
website. (I think it was version 2.0 at the time, but in the meantime I've
updated to 2.1.0.) Then I installed pip through anaconda (conda install pip
(1.5.6) and then through pip I installed mne (pip install mne (0.8.5))

The installations have been done the same way for my linux and mac operating
systems

Best

Lau

Hi Lau,

Before I investigate further, can I know how did you install mne-python on
your machine?

Mainak

Dear list

When running the following commands from the mne report tutorial
website, I get the following error.

>from mne.report import Report
>from mne.datasets import sample

Generate the report:

path = sample.data_path()
report = Report()

IOError: [Errno 2] No such file or directory:
'/home/lau/anaconda/lib/python2.7/site-packages/mne/html/jquery-1.10.2.min.js'

How do I install those missing files?
I'm running python through anaconda (2.1.0) and I have the stable
version of mne (0.8.5).

It's the same issue on my mac 10.9.5 and my linux mint 17 operating
systems.

Best

Lau
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6

Hi Lau,

Hi Alex

I'm not sure it works as supposed to. I do have the files now as the
output below shows:

from mne.report import Report
from mne.datasets import sample

path = sample.data_path()
report = Report()

you need to give the path of the folder you want to render. Something like
this:

report.parse_folder(data_path=path, pattern='*-eve.fif')

have a look at the tutorial here:
http://martinos.org/mne/dev/mne_report_tutorial.html

Let us know if you still face problems.

Best,
Mainak

Embedding : jquery-1.10.2.min.js
Embedding : jquery-ui.min.js
Embedding : bootstrap.min.js
Embedding : jquery-ui.min.css
Embedding : bootstrap.min.css

I can also save the report just fine:
report.save('report.html')

The problem though is that the html is empty. I've attached a screenshot.
I hope I haven't overlooked something obvious.

Best

Lau

hi Lau,

it should be fixed. Version 0.8.6 is on pypi.

mne · PyPI

let us know if it works.

thanks for the bug report.

Alex

Hi Mainak

Of course: I installed anaconda by running the shell script from their
website. (I think it was version 2.0 at the time, but in the meantime
I've
updated to 2.1.0.) Then I installed pip through anaconda (conda install
pip
(1.5.6) and then through pip I installed mne (pip install mne (0.8.5))

The installations have been done the same way for my linux and mac
operating
systems

Best

Lau

Hi Lau,

Before I investigate further, can I know how did you install mne-python
on
your machine?

Mainak

Dear list

When running the following commands from the mne report tutorial
website, I get the following error.

>from mne.report import Report

>from mne.datasets import sample

Generate the report:

path = sample.data_path()

report = Report()

IOError: [Errno 2] No such file or directory:

'/home/lau/anaconda/lib/python2.7/site-packages/mne/
html/jquery-1.10.2.min.js'

How do I install those missing files?
I'm running python through anaconda (2.1.0) and I have the stable
version of mne (0.8.5).

It's the same issue on my mac 10.9.5 and my linux mint 17 operating
systems.

Best

Lau
_______________________________________________
Mne_analysis mailing list
Mne_analysis at nmr.mgh.harvard.edu
Mne_analysis Info Page

The information in this e-mail is intended only for the person to whom
it
is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
MyComplianceReport.com: Compliance and Ethics Reporting . If the e-mail was sent to you
in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.

_______________________________________________
Mne_analysis mailing list
Mne_analysis at nmr.mgh.harvard.edu
Mne_analysis Info Page

The information in this e-mail is intended only for the person to whom
it is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
MyComplianceReport.com: Compliance and Ethics Reporting . If the e-mail was sent to you
in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.

_______________________________________________
Mne_analysis mailing list
Mne_analysis at nmr.mgh.harvard.edu
Mne_analysis Info Page

The information in this e-mail is intended only for the person to whom
it is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
MyComplianceReport.com: Compliance and Ethics Reporting . If the e-mail was sent to you
in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.

_______________________________________________

Mne_analysis mailing list
Mne_analysis at nmr.mgh.harvard.edu
Mne_analysis Info Page

_______________________________________________
Mne_analysis mailing list
Mne_analysis at nmr.mgh.harvard.edu
Mne_analysis Info Page

The information in this e-mail is intended only for the person to whom it
is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
MyComplianceReport.com: Compliance and Ethics Reporting . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.

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7

Hi Mainak

Sorry for not reading the tutorial properly! Thanks for your help!

Best

Lau