I'm wondering if there might be a command line route to create an image of
the show head position window. This would be a tremendously helpful check,
and we have lots of data so it's time consuming for a person to click
through to the head position window for each and manually enter filenames.
sorry for the late reply. As far as I can see scripting the interaction
with the mne_analyze GUI is not possible at the moment.
It should not be too difficult to add this functionality to mne-python
which already allows for scripting visualizations of surfaces.
I created an issue on github so it can be picked up + discussed over there.
I have this mayavi based plotting function which you could use to generate the attached image using the attached script. It's among my "sandbox" scripts, which you can install with $ easy_install eelbrain. The source code is here: https://github.com/christianmbrodbeck/Eelbrain/blob/master/eelbrain/data/plot/coreg.py#L372. Let me know if you have any trouble with it since it's not well documented there (it's an earlier stage of something I am working on for mne-python at the moment).
Christian
Hi Megan,
sorry for the late reply. As far as I can see scripting the interaction with the mne_analyze GUI is not possible at the moment.
It should not be too difficult to add this functionality to mne-python which already allows for scripting visualizations of surfaces.
I created an issue on github so it can be picked up + discussed over there.
I'm wondering if there might be a command line route to create an image of the show head position window. This would be a tremendously helpful check, and we have lots of data so it's time consuming for a person to click through to the head position window for each and manually enter filenames.
Thanks,
Megan Schendel
MEG Technician
The Mind Research Network
1101 Yale Blvd. NE
Albuquerque, New Mexico 87106
505-272-3304
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