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Dear mne users,
I am analyzing an EEG dataset collected with biosemi (64 channels). I don't have the digitized position of the sensors. I want to do source reconstruction using the biosemi layout and the anatomical template ('fsaverage'). However, when I try to plot the alignment between the EEG electrodes position and the MRI, I get a mismatch between between the nasion positions and inaccurate sensor positions (especially the frontal channels look inside the head space).
Here the code I am using:
montage = mne.channels.make_standard_montage('biosemi64')
raw.set_montage(montage)
# mne.viz.plot_montage(montage)
# Download fsaverage files
fs_dir = fetch_fsaverage(verbose=True)
subjects_dir = op.dirname(fs_dir)
# The files live in:
subject = 'fsaverage'
trans = 'fsaverage' # MNE has a built-in fsaverage transformation
src = op.join(fs_dir, 'bem', 'fsaverage-ico-5-src.fif')
bem = op.join(fs_dir, 'bem', 'fsaverage-5120-5120-5120-bem-sol.fif')
# Check that the locations of EEG electrodes is correct with respect to MRI
mne.viz.plot_alignment(
raw.info, src=src, eeg=['original','projected'], trans=trans,
show_axes=True, mri_fiducials=True, dig='fiducials')
And the result I obtain:
[cid:de90d7c0-cf67-4539-8dc7-daf0a831ca1a]
Does anyone have any suggestion on what am I doing wrong?
Thanks!
Silvia
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