read_raw_eeglab gives ValueError: cannot convert float NaN to integer

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1
  • MNE version: 1.6.1
  • operating system: Windows 11

Hi everyone
I am having trouble reading EEGLAB files with MNE. The dataset is from OpenNeuro

When I run this code:

import matplotlib
matplotlib.use("QtAgg")
%matplotlib widget

import mne

raw=mne.io.read_raw_eeglab("C:\xxxxx\sub-006_ses-C1C_task-DriveOnMission_run-2_eeg.set", preload=True)
fig = raw.plot()

It returns this error:

{
	"name": "ValueError",
	"message": "cannot convert float NaN to integer",
	"stack": "---------------------------------------------------------------------------
ValueError                                Traceback (most recent call last)
Cell In[11], line 6
      3 get_ipython().run_line_magic('matplotlib', 'widget')
      5 import mne # \"C:\\Users\\yusuf\\Downloads\\TX15\\sub-006\\ses-C1C\\eeg\\sub-006_ses-C1C_task-DriveOnMission_run-2_eeg.set\"
----> 6 raw=mne.io.read_raw_eeglab(r\"C:\\Users\\yusuf\\Downloads\\TX15\\sub-006\\ses-C1C\\eeg\\sub-006_ses-C1C_task-DriveOnMission_run-2_eeg.set\", preload=True)
      7 #raw = mne.io.read_raw_fif(r\"C:\\Users\\yusuf\\Downloads\\sub-1448.fif\", preload=True, allow_maxshield=True)
      8 raw

File ~\\AppData\\Local\\Packages\\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\\LocalCache\\local-packages\\Python311\\site-packages\\mne\\io\\eeglab\\eeglab.py:332, in read_raw_eeglab(input_fname, eog, preload, uint16_codec, montage_units, verbose)
    288 @fill_doc
    289 def read_raw_eeglab(
    290     input_fname,
   (...)
    295     verbose=None,
    296 ):
    297     r\"\"\"Read an EEGLAB .set file.
    298 
    299     Parameters
   (...)
    330     .. versionadded:: 0.11.0
    331     \"\"\"
--> 332     return RawEEGLAB(
    333         input_fname=input_fname,
    334         preload=preload,
    335         eog=eog,
    336         uint16_codec=uint16_codec,
    337         montage_units=montage_units,
    338         verbose=verbose,
    339     )

File <decorator-gen-237>:12, in __init__(self, input_fname, eog, preload, uint16_codec, montage_units, verbose)

File ~\\AppData\\Local\\Packages\\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\\LocalCache\\local-packages\\Python311\\site-packages\\mne\\io\\eeglab\\eeglab.py:505, in RawEEGLAB.__init__(self, input_fname, eog, preload, uint16_codec, montage_units, verbose)
    503 # create event_ch from annotations
    504 annot = read_annotations(input_fname, uint16_codec=uint16_codec)
--> 505 self.set_annotations(annot)
    506 _check_boundary(annot, None)
    508 _set_dig_montage_in_init(self, eeg_montage)

File <decorator-gen-224>:12, in set_annotations(self, annotations, emit_warning, on_missing, verbose)

File ~\\AppData\\Local\\Packages\\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\\LocalCache\\local-packages\\Python311\\site-packages\\mne\\io\\base.py:737, in BaseRaw.set_annotations(self, annotations, emit_warning, on_missing, verbose)
    735 new_annotations._prune_ch_names(self.info, on_missing)
    736 if annotations.orig_time is None:
--> 737     new_annotations.crop(
    738         0, self.times[-1] + delta, emit_warning=emit_warning
    739     )
    740     new_annotations.onset += self._first_time
    741 else:

File <decorator-gen-35>:12, in crop(self, tmin, tmax, emit_warning, use_orig_time, verbose)

File ~\\AppData\\Local\\Packages\\PythonSoftwareFoundation.Python.3.11_qbz5n2kfra8p0\\LocalCache\\local-packages\\Python311\\site-packages\\mne\\annotations.py:629, in Annotations.crop(***failed resolving arguments***)
    627     duration = 0.0
    628 # convert to absolute times
--> 629 absolute_onset = timedelta(seconds=onset) + offset
    630 absolute_offset = absolute_onset + timedelta(seconds=duration)
    631 out_of_bounds.append(
    632     absolute_onset > absolute_tmax or absolute_offset < absolute_tmin
    633 )

ValueError: cannot convert float NaN to integer"
}

All the Google search results were about Pandas value errors, and I couldn’t find anything about this on the MNE forum. I have no idea how to solve this problem with MNE, as I can’t even read the file.

I would really appreciate it if someone could help me with this issue.

2

This is a bug, I’ve created an issue here: Annotation-related error reading EEGLAB file · Issue #12425 · mne-tools/mne-python · GitHub

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