TYH
(Tzuyu Hsu)
1
- MNE-Python version: 0.23.0
- operating system: ubuntu
I have an error message from creating MNE-BIDS for empty room as below. When I ran ‘write_raw_bids’ for empty room data, it showed this error message.
I also attached my script below.
I run the similar script for raw data. It was totally fine. Is there any suggestions? Many thanks.
richard
(Richard Höchenberger)
2
Hello @TYH, which version of MNE-BIDS is this? We recently released 0.8, can you please try with this version?
TYH
(Tzuyu Hsu)
3
Hi @richard, I use 0.8 version though. Is there any other connected package version which I should pay attention?
richard
(Richard Höchenberger)
4
This is actually supposed to work Could you share a minimal working example so I can try to reproduce this?
TYH
(Tzuyu Hsu)
5
No problem. How to share with you? through email?or?
richard
(Richard Höchenberger)
6
Email is fine as long as the file is small enough. Otherwise, Google Drive or Dropbox or similar will do, or https://wetransfer.com
TYH
(Tzuyu Hsu)
7
I just shared you one example data set and script. Thank you ~~
1 Like
richard
(Richard Höchenberger)
8
Thank you, I have received the data and will take a look.
richard
(Richard Höchenberger)
9
Hello @TYH,
it appears you’ve actually caught a bug in MNE-BIDS there!
I made a fix: WIP: copyfile_kit() didn't handle acq, mrk is None by hoechenberger · Pull Request #850 · mne-tools/mne-bids · GitHub
It’s not yet been merged into our official development branch, but if you want to try it out already, you may install it via
pip install -U https://github.com/hoechenberger/mne-bids/archive/refs/heads/kit-copyfiles.zip
I will let you know when we’ve finally merged it. Shouldn’t take more than 1 to 3 days max.
Thanks for reporting!
Best wishes,
Richard
1 Like
TYH
(Tzuyu Hsu)
10
Hi @richard ,
Thank you very much for speedy reply, amazing!!! I will try it out and let you know.
Best regards,
TYH
richard
(Richard Höchenberger)
11
The bug fix has been merged into the main development branch of MNE-BIDS. You can install it via
pip install -U https://github.com/mne-tools/mne-bids/archive/refs/heads/main.zip
The fix will be included in the next official release, too.
2 Likes
TYH
(Tzuyu Hsu)
12
Hi @richard,
A quick feedback. It works perfect with my data. Thank you~~
1 Like