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Thank you Eric for your reply,
can you please detail more,
as you in the attachment when I load the fif file in brainstorm then I have
2 file : link to raw file & neuromag channels
those what I want to reconvert to fif file
first of all at which type of file I should export it from brainstorm? and
then what code should In used in mne to convert it to fif file?
thank you for your answer
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than "Re: Contents of Mne_analysis digest..."Today's Topics:
1. Re: Pyvista foreground bug (Guillaume Favelier)
2. write fif files (Abdallah Qusaibe)
3. Re: write fif files (Eric Larson)----------------------------------------------------------------------
Message: 1
Date: Wed, 27 May 2020 18:27:11 +0200 (CEST)
From: Guillaume Favelier <guillaume.favelier at inria.fr>
Subject: Re: [Mne_analysis] Pyvista foreground bug
To: mne_analysis at nmr.mgh.harvard.edu
Message-ID:
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Hi! Thanks for the nice feedback!
The revamp of stc plots is still ongoing and some features are still
missing.
I investigated and it appears that the 'background' and 'foreground'
parameters
are not supported yet by the pyvista 3d backend.A way to track the progress of this work is on:
https://github.com/mne-tools/mne-python/issues/7162
I will update this list and I believe this should be fixed shortly.
Guillaume
> Dear developers
>
> Thanks for a terrific graphical update (pyvista stc plots)
>
> One small bug - when changing the background to 'white' and foreground
> to 'black', text is not formatted accordingly (works as intended in
> mayavi) (see images below)
>
> All the best
>
> Lau
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Message: 2
Date: Wed, 27 May 2020 19:56:12 +0300
From: Abdallah Qusaibe <abdallah.qusaibe at gmail.com>
Subject: [Mne_analysis] write fif files
To: mne_analysis at nmr.mgh.harvard.edu
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Dear mne programmers,
I load from a tutorial in brainstorm the fif file:
mind004_050924_median01_raw.fif
as you seen in the attached image after loading we have the channel and raw
fileThe information from the file coil_def.dat is integrated in the channel
file when loading data from CTF .res4 or Elekta .fif files. But in my case
I I edited the coil_def.dat file and aslo I edited the channel file after
loading the fif file mind004_050924_median01_raw.fif,My questions:
-Brainstorm does not provide any FIF writer. How can I write those file in
MNE Python?
-How can I deal with problem in mne ? editing the meg channel files and
coil_def.dat channel, and making the information from the file
coil_def.dat is integrated in the channel file then compute the forward
problem?Best regards
A
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Message: 3
Date: Wed, 27 May 2020 14:21:16 -0400
From: Eric Larson <larson.eric.d at gmail.com>
Subject: Re: [Mne_analysis] write fif files
To: Discussion and support forum for the users of MNE Software
<mne_analysis at nmr.mgh.harvard.edu>
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>
> -Brainstorm does not provide any FIF writer. How can I write those file
> in MNE Python?
>Read, edit, save:
raw = mne.io.read_raw_fif(...) # filename, etc.
raw.info['chs'][idx][...] = ... # edit however you need
raw.save(...) # write to some new filename> -How can I deal with problem in mne ? editing the meg channel files and
> coil_def.dat channel, and making the information from the file
> coil_def.dat is integrated in the channel file then compute the forward
> problem?
>Make your own coil_def.dat and use
https://mne.tools/stable/generated/mne.use_coil_def.html, see for exampleEric
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