Hi,
Thanks for the hint; It must have something to do with it.
I must be overlooking something here, but I can't get it right:
Somehow it looks as if the epochs method looks for timestamps from
before the cropping of the data from somewhere (?), although I'm not
sure how that is possible
I first crop my data with raw.crop, save that data, and load it again
from file.
I previously crop the file at 232 seconds - it loses the first 44 epochs.
Other files I don't crop don't have this problem.
I can't figure out what's wrong about the time indices:
the resulting raw structure has the correct raw.time (from 0 to 618, at
sfreq=1000) and time indices:
raw[0][1] goes from 0 to 618;
len(raw[0][1]): 618001
My events array goes like this:
In [37]: events
Out[37]:
array([[ 9279, 0, 1],
[ 18677, 0, 2],
[ 28475, 0, 3],
[ 38491, 0, 3],
[ 49491, 0, 1],
[ 58705, 0, 3],
[ 69505, 0, 1],
[ 79905, 0, 1],
[ 89736, 0, 1],
[ 99134, 0, 2],
[108933, 0, 1],
[118948, 0, 1],
[128146, 0, 2],
[138361, 0, 3],
[147759, 0, 2],
[157558, 0, 3],
[167774, 0, 1],
......
[595400, 0, 1]])
Notably, I lose the first epochs, not the last epochs:
epochs = mne.Epochs(raw,events, event_id, tmin=tmin, tmax=tmax,
proj=True, picks=picks_plan2,
baseline=None, preload=True,
reject=None)
In [35]: 60 matching events found
Applying baseline correction (mode: mean)
0 projection items activated
Loading data for 60 events and 1001 original time points ...
44 bad epochs dropped
In [36]: epochs.drop_log
Out[36]:
[['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
['NO_DATA'],
[],
[],
[],
[],
[],
[],
[],
[],
[],
[],
[],
[],
[],
[],
[],
[]]
Any Ideas?
Many Thanks,
cheers Tristan