Thank you for the clarification.
Just to confirm, is the following ordering what you would recommend?
- Mark/remove bad channels
- Apply average reference
- Run and apply ICA
- Interpolate bad channels
I noticed that another MNE discussion @richard suggested that average referencing should be done after ICA (See here), since doing it before ICA can smear artifacts across channels. I wanted to confirm which ordering you recommend for this case.
Thank you.