# Mne\_analysis Digest, Vol 75, Issue 1 **URL:** \ **Category:** Mailing List Archive (read-only)\ **Tags:** list-archive\ **Created:** [April 2, 2014, 5:38pm UTC](https://mne.discourse.group/t/mne-analysis-digest-vol-75-issue-1/702 "2014-04-02T17:38:06Z")\ **Posts on this page:** 4\ **Page:** 1
**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\ **Post date:** [April 2, 2014, 5:38pm UTC](https://mne.discourse.group/t/mne-analysis-digest-vol-75-issue-1/702/1 "2014-04-02T17:38:06Z")
Mauricio, Did you set `eog=True` in the arguments to `mne.fiff.pick_types` i.e., picks=mne.fiff.pick\_types(info, meg=False, eeg=True, stim=False, eog=True, exclude=[]) If the picks array is built without your channels of interest then mne.Epochs will throw the error you're seeing c.f. epoching example ( [http://martinos.org/mne/stable/auto\_examples/plot\_from\_raw\_to\_multiple\_epochs\_to\_evoked.html](http://martinos.org/mne/stable/auto_examples/plot_from_raw_to_multiple_epochs_to_evoked.html) ). best, Kambiz ---
**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\ **Post date:** [April 2, 2014, 6:14pm UTC](https://mne.discourse.group/t/mne-analysis-digest-vol-75-issue-1/702/2 "2014-04-02T18:14:46Z")
The other possible scenario is that you need to change the sensor type. This has been available in the latest code for ~ 1 month with the mne.rename\_channels function. HTH D ---
**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\ **Post date:** [April 2, 2014, 7:25pm UTC](https://mne.discourse.group/t/mne-analysis-digest-vol-75-issue-1/702/3 "2014-04-02T19:25:11Z")
Hi! Thanks for your answers. Efectively I set "eog = True". Would I have to set, when I read the raw edt, n\_eeg to another value instead of None? Currently I'm doing that by raw = read\_raw\_edf(input\_fname = bdf\_file, n\_eeg = None, stim\_channel = -1, annot = None, annotmap = None, hpts = hpts\_file, preload = False, verbose = None) On the other hand, I cannot find the documentation for mne.rename\_channels. Could you tell me what do I have to do, more specifically, with this function? All the best, Mauricio. 2014-04-02 15:14 GMT-03:00 dgw \: > The other possible scenario is that you need to change the sensor > type. This has been available in the latest code for ~ 1 month with > the mne.rename\_channels function. > > HTH > D > > \> Mauricio, > \> Did you set `eog=True` in the arguments to `mne.fiff.pick_types` i.e., > \> > \> picks=mne.fiff.pick\_types(info, meg=False, eeg=True, stim=False, > eog=True, > \> exclude=) > \> > \> If the picks array is built without your channels of interest then > \> mne.Epochs will throw the error you're seeing c.f. epoching example > \> ( > [http://martinos.org/mne/stable/auto\_examples/plot\_from\_raw\_to\_multiple\_epochs\_to\_evoked.html](http://martinos.org/mne/stable/auto_examples/plot_from_raw_to_multiple_epochs_to_evoked.html) > ). > \> > \> best, > \> Kambiz > \> > \> > \> ------------------------------------------------------------ > \> Kambiz Tavabi PhD > \> Institute for Learning & Brain Sciences > \> 1715 Columbia Road N > \> Portage Bay Building > \> Box 357988 > \> University of Washington > \> Seattle, WA 98195-7988 > \> Tel: 206-685-6173 > \> ------------------------------------------------------------ > \> > \> > \>\> > \>\> Send Mne\_analysis mailing list submissions to > \>\> mne\_analysis at nmr.mgh.harvard.edu > \>\> > \>\> To subscribe or unsubscribe via the World Wide Web, visit > \>\> [Mne\_analysis Info Page](https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis) > \>\> or, via email, send a message with subject or body 'help' to > \>\> mne\_analysis-request at nmr.mgh.harvard.edu > \>\> > \>\> You can reach the person managing the list at > \>\> mne\_analysis-owner at nmr.mgh.harvard.edu > \>\> > \>\> When replying, please edit your Subject line so it is more specific > \>\> than "Re: Contents of Mne\_analysis digest..." > \>\> > \>\> > \>\> Today's Topics: > \>\> > \>\> 1. how to set eog channels (Mauricio Asp? S?nchez) > \>\> > \>\> > \>\> ---------------------------------------------------------------------- > \>\> > \>\> Message: 1 > \>\> Date: Wed, 2 Apr 2014 11:21:39 -0400 > \>\> From: Mauricio Asp? S?nchez \ > \>\> Subject: [Mne\_analysis] how to set eog channels > \>\> To: "mne\_analysis at nmr.mgh.harvard.edu" > \>\> \ > \>\> Message-ID: > \>\> > \>\> \ > \>\> Content-Type: text/plain; charset="iso-8859-1" > \>\> > \>\> Hi everybody, > \>\> sorry for all these newbie's questions, but I'm really interested in > \>\> migrate all my EEGLab analysis to Mne-Python. > \>\> > \>\> I'm trying to epoch my data, but the command > \>\> > \>\> epochs = mne.Epochs(raw, events = events, event\_id = events\_ids, > \>\> tmin = tmin, tmax = tmax, baseline = baseline, picks = picks, > \>\> preload = True, reject = dict(eeg = 80e-6, eog = 150e-6)) > \>\> > \>\> gives me the error: > \>\> > \>\> ValueError: No EOG channel found. Cannot reject based on EOG. > \>\> > \>\> and I cannot figure out how to label the EOG channels in my raw > structure. > \>\> > \>\> How do I do that? > \>\> > \>\> Thanks for all, > \>\> Mauricio. > \>\> -------------- next part -------------- > \>\> An HTML attachment was scrubbed... > \>\> URL: > \>\> > [http://mail.nmr.mgh.harvard.edu/pipermail/mne\_analysis/attachments/20140402/2c01fbc1/attachment-0001.html](http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20140402/2c01fbc1/attachment-0001.html) > \>\> > \>\> ------------------------------ > \>\> > \>\> \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_ > \>\> Mne\_analysis mailing list > \>\> Mne\_analysis at nmr.mgh.harvard.edu > \>\> [Mne\_analysis Info Page](https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis) > \>\> > \>\> End of Mne\_analysis Digest, Vol 75, Issue 1 > \>\> \*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\* > \>\> > \>\> > \>\> The information in this e-mail is intended only for the person to whom > it > \>\> is > \>\> addressed. 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If you believe this e-mail was sent to you in error and the > \> e-mail > \> contains patient information, please contact the Partners Compliance > \> HelpLine at > \> [MyComplianceReport.com: Compliance and Ethics Reporting](http://www.partners.org/complianceline) . If the e-mail was sent to you > in > \> error > \> but does not contain patient information, please contact the sender and > \> properly > \> dispose of the e-mail. > \> > \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_ > Mne\_analysis mailing list > Mne\_analysis at nmr.mgh.harvard.edu > [Mne\_analysis Info Page](https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis) -------------- next part -------------- An HTML attachment was scrubbed... URL: [http://mail.nmr.mgh.harvard.edu/pipermail/mne\_analysis/attachments/20140402/ab12f524/attachment.html](http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20140402/ab12f524/attachment.html) ---
**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\ **Post date:** [April 2, 2014, 8:11pm UTC](https://mne.discourse.group/t/mne-analysis-digest-vol-75-issue-1/702/4 "2014-04-02T20:11:27Z")
hi Mauricio, > On the other hand, I cannot find the documentation for mne.rename\_channels. > Could you tell me what do I have to do, more specifically, with this > function? it's not released yet. You'll need to install the latest version on github. code of the function is at: [https://github.com/mne-tools/mne-python/blob/master/mne/fiff/channels.py#L190](https://github.com/mne-tools/mne-python/blob/master/mne/fiff/channels.py#L190) then the function is just accessible with mne.rename\_channels HTH Alex