plot_sensors_connectivity() Hi, I have a question about plot_sensors_connectivity(). Can I save the figure somehow or/and make subplots? I don’t need 3D figure, so I just need jpg or png picture. Thanks!

plot_sensors_connectivity() returns a 3D scene, so saving it to disk is a little bit more complicated. Here’s a fully reproducible working example: # %% import mne from mne_connectivity import spectral_connectivity_epochs from mne.datasets import sample from mne_connectivity.viz import plot_sensor…

The function returns a Matplotlib figure instance. So something like from mne_connectivity.viz import plot_sensors_connectivity fig = plot_sensors_connectivity(info, con, ...) fig.set_size_inches(desired_width, desired_height) fig.savefig('my_figure.png') should work. If that doesn’t work, it’s …

Unfortunately it’s not working: --------------------------------------------------------------------------- AttributeError Traceback (most recent call last) Input In [26], in <module> ----> 1 fig.savefig('my_figure.png') AttributeError: 'PyVistaFigure' object has no attr…

@richard , thank you very much!

I’m afraid this is currently not possible, sorry.!

Thank you for your reply. Alternatively, it is possible to export the 3D scene as a glTF file ( export_gltf — PyVista 0.37.0 documentation ) and view it with an online viewer ( https://gltf-viewer.donmccurdy.com/ ).

how did you do this? Because I have been having errors all day

@codZeus please open a new issue, and provide code for a minimal, reproducible example, and the error (including full traceback) you encounter when running that example in a fresh python session.

sure I will. I asked a question about whitened evoked response and whitened GFP that hasn’t been answered. Do you mind helping me with that? Thanks

[image] codZeus: I asked a question about whitened evoked response and whitened GFP that hasn’t been answered. Do you mind helping me with that? there are lots of unanswered questions; I will get to it when I am able.

How to save plot_sensors_connectivity()?

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AMumin December 8, 2022, 10:18am 6

would it be possible to save the returned 3D scene as an interactive 3D pdf file?

How to save 3d connectivity plot

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How to save plot_sensors_connectivity()?

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