# BEM surface error

**URL:** <https://mne.discourse.group/t/bem-surface-error/1551>\
**Category:** Mailing List Archive (read-only)\
**Tags:** list-archive\
**Created:** [June 19, 2018, 2:41pm UTC](https://mne.discourse.group/t/bem-surface-error/1551 "2018-06-19T14:41:02Z")\
**Posts on this page:** 6\
**Page:** 1

<div class="post-metadata">

**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\
**Post date:** [June 19, 2018, 2:41pm UTC](https://mne.discourse.group/t/bem-surface-error/1551/1 "2018-06-19T14:41:02Z")

</div>

External Email - Use Caution

Hi!

I have several subjects that give the error "Surface inner skull is not  
completely inside surface outer skull" when I try to create the BEM-model.  
I know that there has been a thread  
\<[https://github.com/mne-tools/mne-python/issues/3291](https://github.com/mne-tools/mne-python/issues/3291)\> on this subject  
before, but here people only had "minor intersections". Judging from  
mne.viz.plot\_bem, I have a major intersection between surfaces. What would  
be the advisable approach in that case?

Best,  
Karin  
-------------- next part --------------  
An HTML attachment was scrubbed...  
URL: [http://mail.nmr.mgh.harvard.edu/pipermail/mne\_analysis/attachments/20180619/7a8fa2bb/attachment.html](http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20180619/7a8fa2bb/attachment.html)

---

<div class="post-metadata">

**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\
**Post date:** [June 20, 2018, 3:01am UTC](https://mne.discourse.group/t/bem-surface-error/1551/2 "2018-06-20T03:01:13Z")

</div>

External Email - Use Caution

Hi Karin,

can you share a picture of plot\_bem? is it for EEG or MEG data?

Alex

---

<div class="post-metadata">

**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\
**Post date:** [June 20, 2018, 7:32am UTC](https://mne.discourse.group/t/bem-surface-error/1551/3 "2018-06-20T07:32:02Z")

</div>

External Email - Use Caution

Thanks for your answer!  
It's MEG data. The bem\_plot() is attached

Karin

2018-06-20 5:01 GMT+02:00 Alexandre Gramfort \<alexandre.gramfort at inria.fr\>:

> &nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;External Email - Use Caution
> 
> Hi Karin,
> 
> can you share a picture of plot\_bem? is it for EEG or MEG data?
> 
> Alex
> 
> \>  
> \> External Email - Use Caution  
> \>  
> \> Hi!  
> \>  
> \> I have several subjects that give the error "Surface inner skull is not  
> completely inside surface outer skull" when I try to create the BEM-model.  
> I know that there has been a thread on this subject before, but here people  
> only had "minor intersections". Judging from mne.viz.plot\_bem, I have a  
> major intersection between surfaces. What would be the advisable approach  
> in that case?  
> \>  
> \> Best,  
> \> Karin  
> \> \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_  
> \> Mne\_analysis mailing list  
> \> Mne\_analysis at nmr.mgh.harvard.edu  
> \> [Mne\_analysis Info Page](https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis)  
> \>  
> \>  
> \> The information in this e-mail is intended only for the person to whom  
> it is  
> \> addressed. If you believe this e-mail was sent to you in error and the  
> e-mail  
> \> contains patient information, please contact the Partners Compliance  
> HelpLine at  
> \> [MyComplianceReport.com: Compliance and Ethics Reporting](http://www.partners.org/complianceline) . If the e-mail was sent to you  
> in error  
> \> but does not contain patient information, please contact the sender and  
> properly  
> \> dispose of the e-mail.
> 
> \_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_\_  
> Mne\_analysis mailing list  
> Mne\_analysis at nmr.mgh.harvard.edu  
> [Mne\_analysis Info Page](https://mail.nmr.mgh.harvard.edu/mailman/listinfo/mne_analysis)

-------------- next part --------------  
An HTML attachment was scrubbed...  
URL: [http://mail.nmr.mgh.harvard.edu/pipermail/mne\_analysis/attachments/20180620/288e8693/attachment-0001.html](http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20180620/288e8693/attachment-0001.html)  
-------------- next part --------------  
A non-text attachment was scrubbed...  
Name: Screenshot from 2018-06-19 15-21-47.png  
Type: image/png  
Size: 225086 bytes  
Desc: not available  
Url : [http://mail.nmr.mgh.harvard.edu/pipermail/mne\_analysis/attachments/20180620/288e8693/attachment-0001.png](http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20180620/288e8693/attachment-0001.png)

---

<div class="post-metadata">

**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\
**Post date:** [June 20, 2018, 5:15pm UTC](https://mne.discourse.group/t/bem-surface-error/1551/4 "2018-06-20T17:15:41Z")

</div>

External Email - Use Caution

hi,

ok not too bad. If it's MEG you should try with a single layer BEM  
and it should not complain.

See :

[https://martinos.org/mne/stable/auto\_tutorials/plot\_forward.html#compute-forward-solution](https://martinos.org/mne/stable/auto_tutorials/plot_forward.html#compute-forward-solution)

HTH  
Alex

---

<div class="post-metadata">

**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\
**Post date:** [June 20, 2018, 5:15pm UTC](https://mne.discourse.group/t/bem-surface-error/1551/5 "2018-06-20T17:15:59Z")

</div>

External Email - Use Caution

hi,

ok not too bad. If it's MEG you should try with a single layer BEM  
and it should not complain.

See :

[https://martinos.org/mne/stable/auto\_tutorials/plot\_forward.html#compute-forward-solution](https://martinos.org/mne/stable/auto_tutorials/plot_forward.html#compute-forward-solution)

HTH  
Alex

---

<div class="post-metadata">

**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\
**Post date:** [June 20, 2018, 5:21pm UTC](https://mne.discourse.group/t/bem-surface-error/1551/6 "2018-06-20T17:21:04Z")

</div>

External Email - Use Caution

Ok! Thank you!

Skickat fr?n min iPhone
