# automating coregistration **URL:** \ **Category:** Mailing List Archive (read-only)\ **Tags:** list-archive\ **Created:** [March 11, 2020, 3:36pm UTC](https://mne.discourse.group/t/automating-coregistration/2109 "2020-03-11T15:36:21Z")\ **Posts on this page:** 2\ **Page:** 1
**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\ **Post date:** [March 11, 2020, 3:36pm UTC](https://mne.discourse.group/t/automating-coregistration/2109/1 "2020-03-11T15:36:21Z")
External Email - Use Caution Hello, I have several EEG and MRI that I need to coregister. I use mne.gui.coregistration and I supply both the path to the MRI and the path to the EEG. The only thing I need to do after the opening of the window is click on "fit fiducials" (no rescaling the MRI or manually moving fiducials is necessary). Is there a way not to open the coregistration window and simply call the fit\_fiducials function so that the coregistration is automated for all my subjects ? (I would still check that everything went well by plotting the alignment). NB : I'm running on windows and cannot call mne from a command line. -------------- next part -------------- An HTML attachment was scrubbed... URL: [http://mail.nmr.mgh.harvard.edu/pipermail/mne\_analysis/attachments/20200311/a911ae5e/attachment.html](http://mail.nmr.mgh.harvard.edu/pipermail/mne_analysis/attachments/20200311/a911ae5e/attachment.html) ---
**Author:** ![system](https://global.discourse-cdn.com/free1/uploads/mne/original/1X/85cc6bd2b69cb698a166dc6d880fb550510d0144.jpeg) [@system](https://mne.discourse.group/u/system)\ **Post date:** [March 12, 2020, 10:11am UTC](https://mne.discourse.group/t/automating-coregistration/2109/2 "2020-03-12T10:11:35Z")
External Email - Use Caution hi Fleur, you can look at [https://github.com/mne-tools/mne-python/pull/6693](https://github.com/mne-tools/mne-python/pull/6693) Jon Houck in CC may be able to help you Alex