annotate_amplitude for a specific time window

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22

Oh this is not supposed to work at all, this was just an idea of how I imagine things could work if we implemented @drammock’s suggestion. But we have not yet worked on this.

23

ups haha :smiley: thanks for clarifying!!

24

Hi @FranziMNE, may I ask what you ended up doing in this case? I have the very same problem!

Wishing you a lovely day,
Sabia

25

Hi Sabia,

sorry for replying so late! Sooo there wasnt a perfect solution for this. I decided to do it like this:

reject_criteria= dict(
                    eeg=100e-6)       # 100 µV
                    
 flat_criteria=  dict(
                    eeg=1e-6)       # 1 µV                 
 # Epoch data
 epochs = mne.Epochs(raw_load, 
                 events, 
                 event_id=event_id, 
                 baseline=(-0.2,0),
                 tmin=-0.2, 
                 tmax=1,
                 reject=reject_criteria,
                 flat=flat_criteria,
                 detrend=1,
                 reject_by_annotation=False,
                 proj=True,
                 preload=True,
                 )

 len(epochs.events)

https://mne.tools/dev/auto_tutorials/preprocessing/20_rejecting_bad_data.html

It is not perfect, but the best in my point of view

Hope this helps :slight_smile:

Best
Franzi

1 Like
26

Hi Franzi,

please, do not worry! That was not a late reply at all! Thank you so much for sharing this! I will try it now too :slight_smile:

Wishing you a lovely weekend!
Sabia

1 Like
27

Hi :slight_smile: Just reach out to me if I you need any help :slight_smile:

Have a nice weekend!
Franzi

2 Likes